Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
SARC rs224494 chr5:143190502 G/T 5.65E-5 258 21.75 24.63 34.37 KM Plot
SARC rs2281809 chr11:34979322 C/T 6.93E-5 256 20.17 29.9 33.2 KM Plot
SARC rs2288668 chr11:34904509 T/G 1.72E-5 253 19.53 29.87 35.47 KM Plot
SARC rs2290976 chr3:42708632 A/G 2.24E-7 258 18.17 36.8 32.3 KM Plot
SARC rs2292346 chr17:45455473 G/A 4.93E-5 257 19.83 33.6 32.3 KM Plot
SARC rs2298412 chr11:70278250 A/G 4.2E-5 250 30.75 36.33 20.87 KM Plot
SARC rs2303957 chr11:34905145 T/C 1.25E-5 255 19.53 29.9 35.47 KM Plot
SARC rs2306459 chr1:53554305 A/G 5.12E-6 258 10.23 30.73 33.77 KM Plot
SARC rs2322169 chr3:71948457 C/G 5.01E-6 258 15.22 35.37 32.6 KM Plot
SARC rs2336540 chr3:52974589 G/A 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs2336541 chr3:52974630 G/C 2.18E-14 254 30.93 34.57 1.17 KM Plot
SARC rs2359194 chr4:7005196 G/A 2.2E-5 253 16.17 33.2 32.45 KM Plot
SARC rs2404576 chr16:4639466 A/G 4.22E-5 253 17.25 36.08 30.77 KM Plot
SARC rs2497092 chr13:51311222 G/T 3.19E-14 258 1.17 36.08 30.73 KM Plot
SARC rs2516520 chr21:45526076 C/T 2.71E-11 251 4.98 41.57 30.3 KM Plot